Package: GeneCycle 1.1.5

GeneCycle: Identification of Periodically Expressed Genes

The GeneCycle package implements the approaches of Wichert et al. (2004) <doi:10.1093/bioinformatics/btg364>, Ahdesmaki et al. (2005) <doi:10.1186/1471-2105-6-117> and Ahdesmaki et al. (2007) <doi:10.1186/1471-2105-8-233> for detecting periodically expressed genes from gene expression time series data.

Authors:Miika Ahdesmaki, Konstantinos Fokianos, and Korbinian Strimmer.

GeneCycle_1.1.5.tar.gz
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GeneCycle.pdf |GeneCycle.html✨
GeneCycle/json (API)

# Install 'GeneCycle' in R:
install.packages('GeneCycle', repos = c('https://mjafin.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • caulobacter - Microarray Time Series Data for 1444 Caulobacter Crescentus Genes

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.81 score 1 stars 64 scripts 418 downloads 12 mentions 21 exports 4 dependencies

Last updated 4 years agofrom:b2329e7253. Checks:5 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 26 2025
R-4.5-winNOTEFeb 26 2025
R-4.5-macNOTEFeb 26 2025
R-4.5-linuxNOTEFeb 26 2025
R-4.4-winOKFeb 26 2025
R-4.4-macOKFeb 26 2025
R-4.3-winOKFeb 26 2025
R-4.3-macOKFeb 26 2025

Exports:avgpdominant.freqsdominant.freqs.singlefisher.g.testfisher.g.test.singlefit.DCfit.freqsfit.pig.statisticgPopCreateis.constantis.constant.singlemyresampleperiodogramperiodogram.freqperiodogram.specperiodogram.spec.singlerobust.g.testrobust.spectrumrobust.spectrum.singlespearman

Dependencies:corpcorfdrtoollongitudinalMASS