Package: GeneCycle 1.1.6

GeneCycle: Identification of Periodically Expressed Genes

The GeneCycle package implements the approaches of Wichert et al. (2004) <doi:10.1093/bioinformatics/btg364>, Ahdesmaki et al. (2005) <doi:10.1186/1471-2105-6-117> and Ahdesmaki et al. (2007) <doi:10.1186/1471-2105-8-233> for detecting periodically expressed genes from gene expression time series data.

Authors:Miika Ahdesmaki [aut, cre], Konstantinos Fokianos [aut], Korbinian Strimmer [aut]

GeneCycle_1.1.6.tar.gz
GeneCycle_1.1.6.zip(r-4.7-any)GeneCycle_1.1.6.zip(r-4.6-any)GeneCycle_1.1.6.zip(r-4.5-any)
GeneCycle_1.1.6.tgz(r-4.6-any)GeneCycle_1.1.6.tgz(r-4.5-any)
GeneCycle_1.1.6.tar.gz(r-4.7-any)GeneCycle_1.1.6.tar.gz(r-4.6-any)
GeneCycle_1.1.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
GeneCycle/json (API)

# Install 'GeneCycle' in R:
install.packages('GeneCycle', repos = c('https://mjafin.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • caulobacter - Microarray Time Series Data for 1444 Caulobacter Crescentus Genes

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.92 score 1 stars 83 scripts 500 downloads 12 mentions 21 exports 4 dependencies

Last updated from:abe236d82d. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK90
source / vignettesOK136
linux-releaseOK95
macos-releaseOK154
macos-oldrelOK140
windows-develOK69
windows-releaseOK61
windows-oldrelOK67
wasm-releaseOK82

Exports:avgpdominant.freqsdominant.freqs.singlefisher.g.testfisher.g.test.singlefit.DCfit.freqsfit.pig.statisticgPopCreateis.constantis.constant.singlemyresampleperiodogramperiodogram.freqperiodogram.specperiodogram.spec.singlerobust.g.testrobust.spectrumrobust.spectrum.singlespearman

Dependencies:corpcorfdrtoollongitudinalMASS